From 57436ab40517462c72cd06a4914dc4e9957e22d0 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Wed, 15 Oct 2014 23:23:01 -0400 Subject: [PATCH] added -lrt on Linux --- Makefile | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/Makefile b/Makefile index 8a10df6..d0d50cf 100644 --- a/Makefile +++ b/Makefile @@ -14,6 +14,10 @@ INCLUDES= LIBS= -lm -lz -lpthread SUBDIRS= . +ifeq ($(shell uname -s),Linux) + LIBS += -lrt +endif + .SUFFIXES:.c .o .cc .c.o: @@ -52,6 +56,7 @@ bwape.o: ksw.h khash.h bwase.o: bwase.h bntseq.h bwt.h bwtaln.h utils.h kstring.h malloc_wrap.h bwase.o: bwa.h ksw.h bwaseqio.o: bwtaln.h bwt.h utils.h bamlite.h malloc_wrap.h kseq.h +bwashm.o: bwa.h bntseq.h bwt.h bwt.o: utils.h bwt.h kvec.h malloc_wrap.h bwt_gen.o: QSufSort.h malloc_wrap.h bwt_lite.o: bwt_lite.h malloc_wrap.h @@ -66,7 +71,6 @@ bwtsw2_core.o: khash.h ksort.h bwtsw2_main.o: bwt.h bwtsw2.h bntseq.h bwt_lite.h utils.h bwa.h bwtsw2_pair.o: utils.h bwt.h bntseq.h bwtsw2.h bwt_lite.h kstring.h bwtsw2_pair.o: malloc_wrap.h ksw.h -cutvar.o: bwa.h bntseq.h bwt.h kvec.h malloc_wrap.h example.o: bwamem.h bwt.h bntseq.h bwa.h kseq.h malloc_wrap.h fastmap.o: bwa.h bntseq.h bwt.h bwamem.h kvec.h malloc_wrap.h utils.h kseq.h is.o: malloc_wrap.h