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crash under non-typical setting (by John Marshall)

This commit is contained in:
Heng Li 2011-11-12 16:53:53 -05:00
parent 8060693411
commit 56a18659b6
1 changed files with 2 additions and 1 deletions
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3
bwape.c
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@ -346,7 +346,8 @@ int bwa_cal_pac_pos_pe(const bntseq_t *bns, const char *prefix, bwt_t *const _bw
&& (p[1]->type == BWA_TYPE_UNIQUE || p[1]->type == BWA_TYPE_REPEAT)) && (p[1]->type == BWA_TYPE_UNIQUE || p[1]->type == BWA_TYPE_REPEAT))
{ // only when both ends mapped { // only when both ends mapped
b128_t x; b128_t x;
int j, k, n_occ[2]; int j, k;
long long n_occ[2];
for (j = 0; j < 2; ++j) { for (j = 0; j < 2; ++j) {
n_occ[j] = 0; n_occ[j] = 0;
for (k = 0; k < d->aln[j].n; ++k) for (k = 0; k < d->aln[j].n; ++k)