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Merge pull request #123 from bwlang/patch-1 

updates grch38 URL
This commit is contained in:
Heng Li 2017-07-30 16:55:39 -04:00 committed by GitHub
parent 87ed015b24 6442d009cd
commit 498973642f
1 changed files with 1 additions and 1 deletions
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bwakit/run-gen-ref
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@ -2,7 +2,7 @@
root=`dirname $0`
url38="ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz"
url38="ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_full_analysis_set.fna.gz"
url37d5="ftp://ftp.ncbi.nlm.nih.gov/1000genomes/ftp/technical/reference/phase2_reference_assembly_sequence/hs37d5.fa.gz"
if [ $# -eq 0 ]; then