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remove debugging code

This commit is contained in:
Heng Li 2011-10-25 12:38:33 -04:00
parent f56edd07dd
commit 4813257d4f
1 changed files with 0 additions and 25 deletions
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fastmap.c
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@ -39,31 +39,6 @@ int main_fastmap(int argc, char *argv[])
while (kseq_read(seq) >= 0) { while (kseq_read(seq) >= 0) {
for (i = 0; i < seq->seq.l; ++i) for (i = 0; i < seq->seq.l; ++i)
seq->seq.s[i] = nst_nt4_table[(int)seq->seq.s[i]]; seq->seq.s[i] = nst_nt4_table[(int)seq->seq.s[i]];
{
int beg = 97;
uint8_t str[3];
bwtint_t b, e;
bwtintv_t ik, ok[4];
bwt_set_intv(bwt, seq->seq.s[seq->seq.l - 1], ik);
for (i = seq->seq.l - 2; i >= beg; --i) {
//printf("[%lld,%lld,%lld] @ %d\n", ik.x[0], ik.x[1], ik.x[2], i+1);
bwt_extend(bwt, &ik, ok, 1);
ik = ok[seq->seq.s[i]];
if (ik.x[2] == 0) break;
}
printf("[%lld,%lld,%lld] @ %d\n", ik.x[0], ik.x[1], ik.x[2], i+1);
//str[0] = '\1'; str[1] = '\3'; bwt_match_exact(bwt, 2, str, &b, &e); printf("%lld,%lld,%lld\n", b, e, e-b+1);
printf("======================== %lld, [%lld,%lld,%lld,%lld]\n", bwt->primary, bwt->L2[1], bwt->L2[2]-bwt->L2[1], bwt->L2[3]-bwt->L2[2], bwt->L2[4]-bwt->L2[3]);
bwt_set_intv(bwt, seq->seq.s[beg], ik);
for (i = beg + 1; i < seq->seq.l; ++i) {
//printf("[%lld,%lld,%lld] @ %d\n", ik.x[0], ik.x[1], ik.x[2], i-1);
bwt_extend(bwt, &ik, ok, 0);
ik = ok[3-seq->seq.s[i]];
if (ik.x[2] == 0) break;
}
printf("[%lld,%lld,%lld] @ %d\n", ik.x[0], ik.x[1], ik.x[2], i-1);
//str[0] = '\0'; str[1] = '\2'; bwt_match_exact(bwt, 2, str, &b, &e); printf("%lld,%lld,%lld\n", b, e, e-b+1);
}
bwt_smem(bwt, seq->seq.l, (uint8_t*)seq->seq.s, &mem, tvec); bwt_smem(bwt, seq->seq.l, (uint8_t*)seq->seq.s, &mem, tvec);
printf(">%s\t%ld\n", seq->name.s, mem.n); printf(">%s\t%ld\n", seq->name.s, mem.n);
for (i = 0; i < mem.n; ++i) { for (i = 0; i < mem.n; ++i) {