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r381: fixed a bug when upper bound < max read len

This commit is contained in:
Heng Li 2013-04-19 17:44:35 -04:00
parent db7a98636f
commit 3f8caef33c
2 changed files with 6 additions and 1 deletions
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5
bwape.c
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@ -106,6 +106,11 @@ static int infer_isize(int n_seqs, bwa_seq_t *seqs[2], isize_info_t *ii, double
tmp = (int)(p25 - OUTLIER_BOUND * (p75 - p25) + .499); tmp = (int)(p25 - OUTLIER_BOUND * (p75 - p25) + .499);
ii->low = tmp > max_len? tmp : max_len; // ii->low is unsigned ii->low = tmp > max_len? tmp : max_len; // ii->low is unsigned
ii->high = (int)(p75 + OUTLIER_BOUND * (p75 - p25) + .499); ii->high = (int)(p75 + OUTLIER_BOUND * (p75 - p25) + .499);
if (ii->low > ii->high) {
fprintf(stderr, "[infer_isize] fail to infer insert size: upper bound is smaller than read length\n");
free(isizes);
return -1;
}
for (i = 0, x = n = 0; i < tot; ++i) for (i = 0, x = n = 0; i < tot; ++i)
if (isizes[i] >= ii->low && isizes[i] <= ii->high) if (isizes[i] >= ii->low && isizes[i] <= ii->high)
++n, x += isizes[i]; ++n, x += isizes[i];

2
main.c
View File

@ -3,7 +3,7 @@
#include "utils.h" #include "utils.h"
#ifndef PACKAGE_VERSION #ifndef PACKAGE_VERSION
#define PACKAGE_VERSION "0.7.3-r380-beta" #define PACKAGE_VERSION "0.7.3-r381-beta"
#endif #endif
int bwa_fa2pac(int argc, char *argv[]); int bwa_fa2pac(int argc, char *argv[]);