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r315: move kopen.o out of libbwa.a

This commit is contained in:
Heng Li 2013-03-01 11:47:51 -05:00
parent 3e4a178e08
commit 35fb7f9fdf
3 changed files with 4 additions and 5 deletions
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4
Makefile
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@ -3,9 +3,9 @@ CFLAGS= -g -Wall -O2
CXXFLAGS= $(CFLAGS) CXXFLAGS= $(CFLAGS)
AR= ar AR= ar
DFLAGS= -DHAVE_PTHREAD #-D_NO_SSE2 #-D_FILE_OFFSET_BITS=64 DFLAGS= -DHAVE_PTHREAD #-D_NO_SSE2 #-D_FILE_OFFSET_BITS=64
LOBJS= utils.o kstring.o ksw.o kopen.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o LOBJS= utils.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o
AOBJS= QSufSort.o bwt_gen.o stdaln.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o \ AOBJS= QSufSort.o bwt_gen.o stdaln.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o \
is.o bwtindex.o bwape.o \ is.o bwtindex.o bwape.o kopen.o \
bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o \ bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o \
bwtsw2_chain.o fastmap.o bwtsw2_pair.o bwtsw2_chain.o fastmap.o bwtsw2_pair.o
PROG= bwa bwamem-lite PROG= bwa bwamem-lite

3
bwamem.h
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@ -109,7 +109,7 @@ extern "C" {
* Find the aligned regions for one query sequence * Find the aligned regions for one query sequence
* *
* Note that this routine does not generate CIGAR. CIGAR should be * Note that this routine does not generate CIGAR. CIGAR should be
* generated later by bwa_gen_cigar() defined in bwa.c. * generated later by mem_reg2aln() below.
* *
* @param opt alignment parameters * @param opt alignment parameters
* @param bwt FM-index of the reference sequence * @param bwt FM-index of the reference sequence
@ -126,7 +126,6 @@ extern "C" {
* Generate CIGAR and forward-strand position from alignment region * Generate CIGAR and forward-strand position from alignment region
* *
* @param opt alignment parameters * @param opt alignment parameters
* @param bwt FM-index of the reference sequence
* @param bns Information of the reference * @param bns Information of the reference
* @param pac 2-bit encoded reference * @param pac 2-bit encoded reference
* @param l_seq length of query sequence * @param l_seq length of query sequence

2
main.c
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@ -4,7 +4,7 @@
#include "utils.h" #include "utils.h"
#ifndef PACKAGE_VERSION #ifndef PACKAGE_VERSION
#define PACKAGE_VERSION "0.7.0-r314" #define PACKAGE_VERSION "0.7.0-r315"
#endif #endif
static int usage() static int usage()