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bugfix: alignments not outputted

This commit is contained in:
Heng Li 2014-10-25 22:13:31 -04:00
parent 7327f8fa10
commit 2bfcc421d9
1 changed files with 2 additions and 0 deletions
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2
bwa-postalt.js
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@ -206,6 +206,8 @@ function parse_hit(s, opt)
function print_buffer(buf2, fp_hla, hla)
{
if (buf2.length == 0) return;
for (var i = 0; i < buf2.length; ++i)
print(buf2[i].join("\t"));
if (fp_hla != null) {
var name = buf2[0][0] + '/' + (buf2[0][1]>>6&3) + ((buf2[0][1]&16)? '-' : '+');
for (var x in hla) {