From 2bfcc421d92178e4440631bcd0e9f878bc545f07 Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Sat, 25 Oct 2014 22:13:31 -0400
Subject: [PATCH] bugfix: alignments not outputted

---
 bwa-postalt.js | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/bwa-postalt.js b/bwa-postalt.js
index 60d718c..1e8bd06 100644
--- a/bwa-postalt.js
+++ b/bwa-postalt.js
@@ -206,6 +206,8 @@ function parse_hit(s, opt)
 function print_buffer(buf2, fp_hla, hla)
 {
 	if (buf2.length == 0) return;
+	for (var i = 0; i < buf2.length; ++i)
+		print(buf2[i].join("\t"));
 	if (fp_hla != null) {
 		var name = buf2[0][0] + '/' + (buf2[0][1]>>6&3) + ((buf2[0][1]&16)? '-' : '+');
 		for (var x in hla) {