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r895: increase the default max_XA_hits_alt to 200 

Because there are >100 HLA haplotypes
This commit is contained in:
Heng Li 2014-10-14 16:58:42 -04:00
parent 647b0e828a
commit 2a18fa114f
2 changed files with 2 additions and 2 deletions
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2
bwamem.c
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@ -73,7 +73,7 @@ mem_opt_t *mem_opt_init()
o->chunk_size = 10000000; o->chunk_size = 10000000;
o->n_threads = 1; o->n_threads = 1;
o->max_XA_hits = 5; o->max_XA_hits = 5;
o->max_XA_hits_alt = 50; o->max_XA_hits_alt = 200;
o->max_matesw = 50; o->max_matesw = 50;
o->mask_level_redun = 0.95; o->mask_level_redun = 0.95;
o->min_chain_weight = 0; o->min_chain_weight = 0;

2
main.c
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@ -4,7 +4,7 @@
#include "utils.h" #include "utils.h"
#ifndef PACKAGE_VERSION #ifndef PACKAGE_VERSION
#define PACKAGE_VERSION "0.7.10-r890-dirty" #define PACKAGE_VERSION "0.7.10-r895-dirty"
#endif #endif
int bwa_fa2pac(int argc, char *argv[]); int bwa_fa2pac(int argc, char *argv[]);