From 2a18fa114fbd78c018ccc343898c789c5ce86793 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Tue, 14 Oct 2014 16:58:42 -0400 Subject: [PATCH] r895: increase the default max_XA_hits_alt to 200 Because there are >100 HLA haplotypes --- bwamem.c | 2 +- main.c | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/bwamem.c b/bwamem.c index 7c54b25..79785f4 100644 --- a/bwamem.c +++ b/bwamem.c @@ -73,7 +73,7 @@ mem_opt_t *mem_opt_init() o->chunk_size = 10000000; o->n_threads = 1; o->max_XA_hits = 5; - o->max_XA_hits_alt = 50; + o->max_XA_hits_alt = 200; o->max_matesw = 50; o->mask_level_redun = 0.95; o->min_chain_weight = 0; diff --git a/main.c b/main.c index 5a2af4c..db3c34f 100644 --- a/main.c +++ b/main.c @@ -4,7 +4,7 @@ #include "utils.h" #ifndef PACKAGE_VERSION -#define PACKAGE_VERSION "0.7.10-r890-dirty" +#define PACKAGE_VERSION "0.7.10-r895-dirty" #endif int bwa_fa2pac(int argc, char *argv[]);