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bugfix: isize is off by 1

This commit is contained in:
Heng Li 2013-02-24 23:00:51 -05:00
parent 0b4a40dc25
commit 29e41b592c
1 changed files with 1 additions and 1 deletions
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2
bwamem.c
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@ -550,7 +550,7 @@ void bwa_hit2sam(kstring_t *str, const int8_t mat[25], int q, int r, int w, cons
if (mid == rid) { if (mid == rid) {
int64_t p0 = p->rb < bns->l_pac? p->rb : (bns->l_pac<<1) - 1 - p->rb; int64_t p0 = p->rb < bns->l_pac? p->rb : (bns->l_pac<<1) - 1 - p->rb;
int64_t p1 = m->rb < bns->l_pac? m->rb : (bns->l_pac<<1) - 1 - m->rb; int64_t p1 = m->rb < bns->l_pac? m->rb : (bns->l_pac<<1) - 1 - m->rb;
kputw(p0 - p1, str); kputw(p0 - p1 + (p0 > p1? 1 : -1), str);
} else kputw(0, str); } else kputw(0, str);
kputc('\t', str); kputc('\t', str);
} else kputsn("\t*\t0\t0\t", 7, str); } else kputsn("\t*\t0\t0\t", 7, str);