zzh
/
fast-bwa
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Exclude empty SAM lines in bounds check for ALT postprocessor

This commit is contained in:
Imran Haque 2018-04-07 07:47:32 +00:00
parent fde1fd7ce3
commit 27dd1da702
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
bwakit/bwa-postalt.js
View File

@ -283,7 +283,7 @@ function bwa_postalt(args)
// process SAM // process SAM
var buf2 = [], hla = {}; var buf2 = [], hla = {};
file = args.length - getopt.ind >= 2? new File(args[getopt.ind+1]) : new File(); file = args.length - getopt.ind >= 2? new File(args[getopt.ind+1]) : new File();
while (file.readline(buf) >= 0) { while (file.readline(buf) > 0) {
var m, line = buf.toString(); var m, line = buf.toString();
if (line.charAt(0) == '@') { // print and then skip the header line if (line.charAt(0) == '@') { // print and then skip the header line