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dev-471: fixed a compiling error from last commit

This commit is contained in:
Heng Li 2014-04-10 11:54:17 -04:00
parent ccbbe48c4f
commit 23e0e99ec0
2 changed files with 2 additions and 2 deletions
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2
bwamem.c
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@ -986,7 +986,7 @@ mem_aln_t mem_reg2aln2(const mem_opt_t *opt, const bntseq_t *bns, const uint8_t
query[i] = query_[i] < 5? query_[i] : nst_nt4_table[(int)query_[i]]; query[i] = query_[i] < 5? query_[i] : nst_nt4_table[(int)query_[i]];
a.mapq = ar->secondary < 0? mem_approx_mapq_se(opt, ar) : 0; a.mapq = ar->secondary < 0? mem_approx_mapq_se(opt, ar) : 0;
if (ar->secondary >= 0) a.flag |= 0x100; // secondary alignment if (ar->secondary >= 0) a.flag |= 0x100; // secondary alignment
if ((ret = bwa_fix_xref2(opt->mat, opt->o_del, opt->e_del, opt->o_ins, opt->e_ins, opt->w, bns, pac, (uint8_t*)query, &qb, &qe, &rb, &re)) < 0) { if (bwa_fix_xref2(opt->mat, opt->o_del, opt->e_del, opt->o_ins, opt->e_ins, opt->w, bns, pac, (uint8_t*)query, &qb, &qe, &rb, &re) < 0) {
if (bwa_verbose >= 2 && name) if (bwa_verbose >= 2 && name)
fprintf(stderr, "[W::%s] A cross-chr hit of read '%s' has been dropped.\n", __func__, name); fprintf(stderr, "[W::%s] A cross-chr hit of read '%s' has been dropped.\n", __func__, name);
goto err_reg2aln; goto err_reg2aln;

2
main.c
View File

@ -4,7 +4,7 @@
#include "utils.h" #include "utils.h"
#ifndef PACKAGE_VERSION #ifndef PACKAGE_VERSION
#define PACKAGE_VERSION "0.7.8+dev-r470" #define PACKAGE_VERSION "0.7.8+dev-r471"
#endif #endif
int bwa_fa2pac(int argc, char *argv[]); int bwa_fa2pac(int argc, char *argv[]);