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fast-bwa
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fixed a long existing bug 

This bug may cause segfault (though never to me) and lead to missing
suboptimal hits. But the top hits should not be affected.
This commit is contained in:
Heng Li 2011-10-12 00:05:01 -04:00
parent beedc988f0
commit 2255c4cd4b
1 changed files with 1 additions and 1 deletions
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2
bwtgap.c
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@ -57,7 +57,7 @@ static inline void gap_push(gap_stack_t *stack, int a, int i, bwtint_t k, bwtint
p = q->stack + q->n_entries;
p->info = (u_int32_t)score<<21 | a<<20 | i; p->k = k; p->l = l;
p->n_mm = n_mm; p->n_gapo = n_gapo; p->n_gape = n_gape; p->state = state;
if (is_diff) p->last_diff_pos = i;
p->last_diff_pos = is_diff? i : -1;
++(q->n_entries);
++(stack->n_entries);
if (stack->best > score) stack->best = score;