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more debugging info at -v5

This commit is contained in:
Heng Li 2014-05-06 16:35:40 -04:00
parent 4b951592fb
commit 1ced2f386c
1 changed files with 1 additions and 1 deletions
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2
bwa-helper.js
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@ -653,8 +653,8 @@ function bwa_genalt(args)
print(t.join("\t")); print(t.join("\t"));
var cnt = 0; var cnt = 0;
for (var i = 0; i < hits.length; ++i) { for (var i = 0; i < hits.length; ++i) {
if (opt.verbose >= 5) print(obj2str(hits[i]));
if (hits[i].g != reported_g || i == reported_i) continue; if (hits[i].g != reported_g || i == reported_i) continue;
//print(obj2str(hits[i]));
var s = [t[0], flag&0xf10, hits[i].ctg, hits[i].start+1, mapQ, hits[i].cigar, '*', 0, 0]; var s = [t[0], flag&0xf10, hits[i].ctg, hits[i].start+1, mapQ, hits[i].cigar, '*', 0, 0];
// update name // update name
if (flag&0x40) s[0] += "/1"; if (flag&0x40) s[0] += "/1";