From 1ced2f386c049f82404f69c60556ec4735027885 Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Tue, 6 May 2014 16:35:40 -0400
Subject: [PATCH] more debugging info at -v5

---
 bwa-helper.js | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/bwa-helper.js b/bwa-helper.js
index 202645d..8a234b8 100644
--- a/bwa-helper.js
+++ b/bwa-helper.js
@@ -653,8 +653,8 @@ function bwa_genalt(args)
 		print(t.join("\t"));
 		var cnt = 0;
 		for (var i = 0; i < hits.length; ++i) {
+			if (opt.verbose >= 5) print(obj2str(hits[i]));
 			if (hits[i].g != reported_g || i == reported_i) continue;
-			//print(obj2str(hits[i]));
 			var s = [t[0], flag&0xf10, hits[i].ctg, hits[i].start+1, mapQ, hits[i].cigar, '*', 0, 0];
 			// update name
 			if (flag&0x40) s[0] += "/1";