diff --git a/NEWS b/NEWS index eb9c37a..a7c64ed 100644 --- a/NEWS +++ b/NEWS @@ -1,3 +1,20 @@ +Release 0.7.7 (25 Feburary, 2014) +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +This release fixes incorrect MD tags in the BWA-MEM output. + +A note about short-read mapping to GRCh38. The new human reference genome +GRCh38 contains 60Mbp program generated alpha repeat arrays, some of which are +hard masked as they cannot be localized. These highly repetitive arrays make +BWA-MEM ~50% slower. If you are concerned with the performance of BWA-MEM, you +may consider to use option "-c2000 -m50". On simulated data, this setting helps +the performance at a very minor cost on accuracy. I may consider to change the +default in future releases. + +(0.7.7: 25 Feburary 2014, r441) + + + Release 0.7.6 (31 Januaray, 2014) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ diff --git a/bwa.1 b/bwa.1 index 5949a1b..601a529 100644 --- a/bwa.1 +++ b/bwa.1 @@ -1,4 +1,4 @@ -.TH bwa 1 "31 January 2014" "bwa-0.7.6" "Bioinformatics tools" +.TH bwa 1 "25 Feburary 2014" "bwa-0.7.7" "Bioinformatics tools" .SH NAME .PP bwa - Burrows-Wheeler Alignment Tool diff --git a/main.c b/main.c index 803cf10..a8df9c0 100644 --- a/main.c +++ b/main.c @@ -4,7 +4,7 @@ #include "utils.h" #ifndef PACKAGE_VERSION -#define PACKAGE_VERSION "0.7.6a+dev-r440" +#define PACKAGE_VERSION "0.7.7-r441" #endif int bwa_fa2pac(int argc, char *argv[]);