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use the old mapQ by default 

the new mapQ overestimate
This commit is contained in:
Heng Li 2013-09-06 14:04:41 -04:00
parent 451d60f3be
commit 1346f03ff1
2 changed files with 3 additions and 3 deletions
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4
bwamem.c
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@ -63,8 +63,8 @@ mem_opt_t *mem_opt_init()
o->chunk_size = 10000000; o->chunk_size = 10000000;
o->n_threads = 1; o->n_threads = 1;
o->max_matesw = 100; o->max_matesw = 100;
o->mapQ_coef_len = 100; // o->mapQ_coef_len = 100; o->mapQ_coef_fac = log(o->mapQ_coef_len);
o->mapQ_coef_fac = log(o->mapQ_coef_len); o->mapQ_coef_len = o->mapQ_coef_fac = 0;
bwa_fill_scmat(o->a, o->b, o->mat); bwa_fill_scmat(o->a, o->b, o->mat);
return o; return o;
} }

2
main.c
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@ -3,7 +3,7 @@
#include "utils.h" #include "utils.h"
#ifndef PACKAGE_VERSION #ifndef PACKAGE_VERSION
#define PACKAGE_VERSION "0.7.5a-r406" #define PACKAGE_VERSION "0.7.5a-r411"
#endif #endif
int bwa_fa2pac(int argc, char *argv[]); int bwa_fa2pac(int argc, char *argv[]);