From 1346f03ff12a9e1510d6f8835734a1a08bbd7661 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Fri, 6 Sep 2013 14:04:41 -0400 Subject: [PATCH] use the old mapQ by default the new mapQ overestimate --- bwamem.c | 4 ++-- main.c | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/bwamem.c b/bwamem.c index 0b8ec48..488913a 100644 --- a/bwamem.c +++ b/bwamem.c @@ -63,8 +63,8 @@ mem_opt_t *mem_opt_init() o->chunk_size = 10000000; o->n_threads = 1; o->max_matesw = 100; - o->mapQ_coef_len = 100; - o->mapQ_coef_fac = log(o->mapQ_coef_len); +// o->mapQ_coef_len = 100; o->mapQ_coef_fac = log(o->mapQ_coef_len); + o->mapQ_coef_len = o->mapQ_coef_fac = 0; bwa_fill_scmat(o->a, o->b, o->mat); return o; } diff --git a/main.c b/main.c index dd60d1c..fdf48b8 100644 --- a/main.c +++ b/main.c @@ -3,7 +3,7 @@ #include "utils.h" #ifndef PACKAGE_VERSION -#define PACKAGE_VERSION "0.7.5a-r406" +#define PACKAGE_VERSION "0.7.5a-r411" #endif int bwa_fa2pac(int argc, char *argv[]);