diff --git a/fastmap.c b/fastmap.c index b00ec00..40ccdf9 100644 --- a/fastmap.c +++ b/fastmap.c @@ -54,7 +54,7 @@ int main_mem(int argc, char *argv[]) else return 1; } if (opt->n_threads < 1) opt->n_threads = 1; - if (optind + 1 >= argc) { + if (optind + 1 >= argc || optind + 3 < argc) { fprintf(stderr, "\n"); fprintf(stderr, "Usage: bwa mem [options] [in2.fq]\n\n"); fprintf(stderr, "Algorithm options:\n\n");