zzh
/
fast-bwa
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

fix assertion failure report on bio-bwa-help mailing list 

bwase.c:180: bwa_refine_gapped_core: Assertion `re - rb == rlen' failed
This commit is contained in:
Steven Leonard 2016-02-11 14:00:18 +00:00
parent f9ce2a6c73
commit 099c24f5fc
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
bwape.c
View File

@ -379,7 +379,7 @@ int bwa_cal_pac_pos_pe(const bntseq_t *bns, const char *prefix, bwt_t *const _bw
bwt_multi1_t *q = p[j]->multi + k;
q->pos = bwa_sa2pos(bns, bwt, q->pos, p[j]->len + q->ref_shift, &strand);
q->strand = strand;
if (q->pos != p[j]->pos)
if (q->pos != p[j]->pos && q->pos != (bwtint_t)-1)
p[j]->multi[n_multi++] = *q;
}
p[j]->n_multi = n_multi;