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Merge pull request #355 from clintval/cv_document_new_XB 

Document that the XB tag now contains the mapping quality too
This commit is contained in:
Heng Li 2022-06-03 15:01:14 -04:00 committed by GitHub
parent 8fdc96b5cf c7c2e6ddf7
commit 0028f086d8
1 changed files with 1 additions and 1 deletions
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fastmap.c
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@ -319,7 +319,7 @@ int main_mem(int argc, char *argv[])
fprintf(stderr, " specify the mean, standard deviation (10%% of the mean if absent), max\n");
fprintf(stderr, " (4 sigma from the mean if absent) and min of the insert size distribution.\n");
fprintf(stderr, " FR orientation only. [inferred]\n");
fprintf(stderr, " -u output XB instead of XA; XB is XA with the alignment score added.\n");
fprintf(stderr, " -u output XB instead of XA; XB is XA with the alignment score and mapping quality added.\n");
fprintf(stderr, "\n");
fprintf(stderr, "Note: Please read the man page for detailed description of the command line and options.\n");
fprintf(stderr, "\n");