24 lines
467 B
C
24 lines
467 B
C
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#ifndef BWA_H_
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#define BWA_H_
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#include <stdint.h>
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typedef struct {
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int l_seq;
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char *name, *comment, *seq, *qual, *sam;
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} bseq1_t;
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#ifdef __cplusplus
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extern "C" {
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#endif
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bseq1_t *bseq_read(int chunk_size, int *n_, void *ks1_, void *ks2_);
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uint32_t *bwa_gen_cigar(const int8_t mat[25], int q, int r, int w_, int64_t l_pac, const uint8_t *pac, int l_query, uint8_t *query, int64_t rb, int64_t re, int *score, int *n_cigar);
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#ifdef __cplusplus
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}
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#endif
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#endif
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