2014-08-07 23:59:37 +08:00
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#ifndef INTEL_EXT_H
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#define INTEL_EXT_H
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#include <stdint.h>
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2014-08-08 01:43:07 +08:00
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#define INTEL_MIN_LEN 16
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#define INTEL_MAX_LEN 126
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2014-08-07 23:59:37 +08:00
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#ifdef __cplusplus
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extern "C" {
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#endif
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void intel_init();
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void intel_filter(uint8_t *refSeq, int refLen, uint8_t *querySeq, int queryLen, int initScore, int endBonus,
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int *alignedQLen, int *alignedRLen, int *score, float *confidence);
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2014-08-08 01:43:07 +08:00
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int intel_extend(int qlen, uint8_t *query, int tlen, uint8_t *target, int m, const int8_t *mat, int gapo, int gape,
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int w, int end_bonus, int zdrop, int h0, int *qle, int *tle, int *gtle, int *gscore, int *max_off);
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2014-08-07 23:59:37 +08:00
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#ifdef __cplusplus
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}
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#endif
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#endif
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