fast-bwa/scripts/seed2.py

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#!/bin/env python3
import sys
import os
fn = sys.argv[1]
n_all = 0
n_direct = 0
n_direct_start_len = 0
n_seed_len = 0
with open(fn, 'r') as f:
for line in f:
dat = line.strip().split('\t')
if dat[0] == "start":
n_all += 1
if (len(dat) == 2):
n_direct += 1
n_direct_start_len += int(dat[0])
n_seed_len += int(dat[1])
print(n_all, n_direct, n_direct / n_all, n_direct_start_len / n_direct, n_seed_len / n_direct)