30 lines
668 B
C
30 lines
668 B
C
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#ifndef BWA_MAIN_H
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#define BWA_MAIN_H
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#ifdef __cplusplus
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extern "C" {
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#endif
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int bwa_fa2pac(int argc, char *argv[]);
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int bwa_pac_rev(int argc, char *argv[]);
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int bwa_pac2cspac(int argc, char *argv[]);
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int bwa_pac2bwt(int argc, char *argv[]);
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int bwa_bwtupdate(int argc, char *argv[]);
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int bwa_bwt2sa(int argc, char *argv[]);
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int bwa_index(int argc, char *argv[]);
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int bwa_aln(int argc, char *argv[]);
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int bwt_bwtgen_main(int argc, char *argv[]);
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int bwa_sai2sam_se(int argc, char *argv[]);
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int bwa_sai2sam_pe(int argc, char *argv[]);
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int bwa_stdsw(int argc, char *argv[]);
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int bwa_bwtsw2(int argc, char *argv[]);
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#ifdef __cplusplus
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}
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#endif
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#endif
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