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run.sh
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@ -1,26 +1,23 @@
time ./bwa mem -t 12 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \ time ./bwa mem -t 1 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \
/home/zzh/data/reference/human_g1k_v37_decoy.fasta \ /public/home/zzh/data/reference/human_g1k_v37_decoy.fasta \
/home/zzh/data/fastq/nm1.fq \ /public/home/zzh/data/fastq/ZY2003109152013000/nm1.fq \
/home/zzh/data/fastq/nm2.fq \ /public/home/zzh/data/fastq/ZY2003109152013000/nm2.fq \
-o /dev/null -o /dev/null
# time ./bwa mem -t 1 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \
# /public/home/zzh/data/reference/human_g1k_v37_decoy.fasta \
# /public/home/zzh/data/fastq/ZY2003109152013000/nm1.fq \
# /public/home/zzh/data/fastq/ZY2003109152013000/nm2.fq \
# -o /dev/null
# time ./bwa mem -t 64 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \ # time ./bwa mem -t 64 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \
# /public/home/zzh/data/reference/human_g1k_v37_decoy.fasta \ # /public/home/zzh/data/reference/human_g1k_v37_decoy.fasta \
# /public/home/zzh/data/fastq/ZY2003109152013000/nm1.fq \ # /public/home/zzh/data/fastq/ZY2003109152013000/nm1.fq \
# /public/home/zzh/data/fastq/ZY2003109152013000/nm2.fq \ # /public/home/zzh/data/fastq/ZY2003109152013000/nm2.fq \
# -o /dev/null # -o /dev/null
#/public/home/zzh/data/fastq/n1.fq \ #/public/home/zzh/data/fastq/n1.fq \
#/public/home/zzh/data/fastq/n2.fq \ #/public/home/zzh/data/fastq/n2.fq \
#/share_nas3/zyseq-release-v1.1.3/zyseq/wes/resource/reference/human_g1k_v37_decoy.fasta \
#/share_nas3/zyseq-release-v1.1.3/zyseq/data/n1.fq \
#/share_nas3/zyseq-release-v1.1.3/zyseq/data/n2.fq \ #/share_nas3/zyseq-release-v1.1.3/zyseq/wes/resource/reference/human_g1k_v37_decoy.fasta \
#-o reads_mapping.sam #/share_nas3/zyseq-release-v1.1.3/zyseq/data/n1.fq \
#/share_nas3/zyseq-release-v1.1.3/zyseq/data/n2.fq \
#-o reads_mapping.sam