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Author SHA1 Message Date
Rob Davies 3d33ab063e Merge branch 'master' into master_fixes 
Merged to master version b621d3a

Conflicts:
	Makefile
	bntseq.c
	bwa.c
	bwase.c
	bwaseqio.c
	bwtaln.c
	bwtindex.c
	bwtio.c
	bwtmisc.c
	bwtsw2_aux.c
	cs2nt.c
	fastmap.c
	khash.h
	kseq.h
	ksw.c
	kvec.h
	simple_dp.c
	utils.c
	utils.h
 2013-03-01 09:37:46 +00:00
Rob Davies b081ac9b8b Use wrapper functions to catch system errors 
Use the wrapper functions in utils.c plus a few extra bits of error
checking code to catch system errors and exit non-zero when they occur.
 2012-12-16 10:34:57 +00:00
Heng Li 007c3eb75d Imported from my local bwa repository, the master repository. 2011-01-13 20:52:12 -05:00