55 Commits (e88529687fc35a212d54316f8ced60320e70c51a)

Author	SHA1	Message	Date
Heng Li	dcb190069a	PE NOT working, yet	2013-02-11 16:10:14 -05:00
Heng Li	99907c98fb	separated and improved SAM printing code ... This is for the PE mode. The routines may also be useful for bwa-sw, but probably I won't change the old code.	2013-02-11 15:29:03 -05:00
Heng Li	b6006cbe9d	skip orientations that are much smaller than best	2013-02-11 13:44:39 -05:00
Heng Li	4431e359e2	analyze isize distribution	2013-02-11 12:15:12 -05:00
Heng Li	59eaf650ac	code backup	2013-02-11 10:59:38 -05:00