55 Commits (b8e189c1e5ff2a851b5194d9dadc99a8a7748bf1)

Author	SHA1	Message	Date
Heng Li	ca93a71e6e	complete single-end alignment	2012-04-08 00:02:06 -04:00
Heng Li	080726cb47	preliminary doc	2012-04-07 22:50:07 -04:00
Heng Li	1cef219667	compute CIGAR; rev seq not working	2012-04-07 22:00:03 -04:00
Heng Li	66154ff5d2	towards refined gapped; unfinished	2012-04-07 01:25:39 -04:00
Heng Li	a1abfe9977	API: aln seems working	2012-04-07 00:23:01 -04:00