e5ab59db53
Multiple changes:
...
1. Removed bwa.{h,c}. I am not going to finish them anyway.
2. Updated to the latest khash.h, which should be faster.
3. Define 64-bit vector and 128-bit integer/vector in utils.h.
2013-02-12 09:50:28 -05:00
4431e359e2
analyze isize distribution
2013-02-11 12:15:12 -05:00
cd818687ac
r115: added -I and -S to bwasw
2012-04-17 20:43:43 -04:00
64e353ce49
bugfix: bwa-sw PE segfault in rare case
2011-11-28 09:12:21 -05:00
182cb2e89c
use standard SW when no SSE2
2011-11-19 19:38:21 -05:00
8060693411
multithreading works again
2011-11-12 16:50:58 -05:00
fa8cfe5567
bugfix: wrong mapping quality
2011-11-12 12:12:45 -05:00
b42910ada6
proper mate information
2011-11-12 00:49:21 -05:00
e06685db45
bwa-sw PE seems working (SAM is incorrect)
2011-11-07 00:51:43 -05:00
c8c79ef024
mate rescue seems working (not MT)
2011-11-06 16:20:40 -05:00
17eaac5a21
compute insert size distribution
2011-11-05 23:17:52 -04:00
Heng Li
Heng Li