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3 Commits (90ecd344ba79b33c78e69ee622d376cf7dd14a21)

Author SHA1 Message Date
Rob Davies b081ac9b8b Use wrapper functions to catch system errors 
Use the wrapper functions in utils.c plus a few extra bits of error
checking code to catch system errors and exit non-zero when they occur.
 2012-12-16 10:34:57 +00:00
Shaun Jackman 84d34e1d0b Do not inline functions used externally 
Compiling using CLANG gives the following errors:
Undefined symbols for architecture x86_64:
  "_bwt_occ", referenced from:
      _bwt_cal_sa in bwt.o
      _bwt_sa in bwt.o
  "_bwt_2occ", referenced from:
      _bwt_match_exact in bwt.o
      _bwt_match_exact_alt in bwt.o
      _bwt_cal_width in bwtaln.o
  "_bwt_2occ4", referenced from:
      _bwt_match_gap in bwtgap.o
      _bsw2_core in bwtsw2_core.o
  "_bwtl_2occ4", referenced from:
      _bsw2_core in bwtsw2_core.o
 2012-06-25 12:48:43 -07:00
Heng Li 007c3eb75d Imported from my local bwa repository, the master repository. 2011-01-13 20:52:12 -05:00