12 Commits (6641788d38ef874d09f8a88a3eac3d9df5ea2aa3)

Author	SHA1	Message	Date
Heng Li	6641788d38	preparation for further changes	2013-01-31 11:42:31 -05:00
Shaun Jackman	84d34e1d0b	Do not inline functions used externally ... Compiling using CLANG gives the following errors: Undefined symbols for architecture x86_64: "_bwt_occ", referenced from: _bwt_cal_sa in bwt.o _bwt_sa in bwt.o "_bwt_2occ", referenced from: _bwt_match_exact in bwt.o _bwt_match_exact_alt in bwt.o _bwt_cal_width in bwtaln.o "_bwt_2occ4", referenced from: _bwt_match_gap in bwtgap.o _bsw2_core in bwtsw2_core.o "_bwtl_2occ4", referenced from: _bsw2_core in bwtsw2_core.o	2012-06-25 12:48:43 -07:00
Heng Li	150bfbdef4	fixed a deadlock; SMEM iterator	2011-11-24 19:15:14 -05:00
Heng Li	eeedda105d	perhaps improves samse/sampe	2011-11-24 01:22:02 -05:00
Heng Li	4083fe9413	fixed a typo	2011-11-02 09:03:05 -04:00
Heng Li	673ae4aaf8	throw an error if insufficient memory during index	2011-10-31 13:26:24 -04:00
Heng Li	f56edd07dd	forward-backward search seems working	2011-10-25 12:31:36 -04:00
Heng Li	7626595e3a	backup the current debugging code; more changes	2011-10-25 10:03:57 -04:00
Heng Li	22c2252e15	added bidirectional bwt; seems buggy	2011-10-25 00:22:28 -04:00
Heng Li	b7e8c4c5aa	fixed a bug in 2occ4()	2011-10-20 11:23:23 -04:00
Heng Li	c948c647a0	make changes to bwt.c	2011-10-19 17:42:42 -04:00
Heng Li	007c3eb75d	Imported from my local bwa repository, the master repository.	2011-01-13 20:52:12 -05:00