From e10fc577e1d01730b8344aec0045ad078bebd925 Mon Sep 17 00:00:00 2001 From: Jason Gilliland Date: Thu, 31 Mar 2016 12:26:42 -0400 Subject: [PATCH] Fix a few typos in man page --- bwa.1 | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/bwa.1 b/bwa.1 index ee4e4f3..206e32a 100644 --- a/bwa.1 +++ b/bwa.1 @@ -302,7 +302,7 @@ Output all found alignments for single-end or unpaired paired-end reads. These alignments will be flagged as secondary alignments. .TP .B -C -Append append FASTA/Q comment to SAM output. This option can be used to +Append FASTA/Q comment to SAM output. This option can be used to transfer read meta information (e.g. barcode) to the SAM output. Note that the FASTA/Q comment (the string after a space in the header line) must conform the SAM spec (e.g. BC:Z:CGTAC). Malformated comments lead to incorrect SAM output. @@ -316,7 +316,7 @@ supplementary alignments. Mark shorter split hits as secondary (for Picard compatibility). .TP .BI -v \ INT -Control the verbose level of the output. This option has not been fully +Control the verbosity level of the output. This option has not been fully supported throughout BWA. Ideally, a value 0 for disabling all the output to stderr; 1 for outputting errors only; 2 for warnings and errors; 3 for all normal messages; 4 or higher for debugging. When this option takes value