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Update README.md 

The 'Illumina paired-end reads no longer than ~70bp' example should use sampe instead of samse
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mmoisse 2014-09-14 11:26:39 +02:00
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@ -87,7 +87,7 @@ settings:
* Illumina paired-end reads no longer than ~70bp: * Illumina paired-end reads no longer than ~70bp:
bwa aln ref.fa read1.fq > read1.sai; bwa aln ref.fa read2.fq > read2.sai bwa aln ref.fa read1.fq > read1.sai; bwa aln ref.fa read2.fq > read2.sai
bwa samse ref.fa reads.sai reads.fq > aln-pe.sam bwa sampe ref.fa reads1.sai reads2.sai reads1.fq reads2.fq > aln-pe.sam
* PacBio subreads to a reference genome: * PacBio subreads to a reference genome: