From dfd8c9eeb60a4d3970bfbecaa87ad452903a5a69 Mon Sep 17 00:00:00 2001 From: mmoisse Date: Sun, 14 Sep 2014 11:26:39 +0200 Subject: [PATCH] Update README.md The 'Illumina paired-end reads no longer than ~70bp' example should use sampe instead of samse --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index dff245e..da02e39 100644 --- a/README.md +++ b/README.md @@ -87,7 +87,7 @@ settings: * Illumina paired-end reads no longer than ~70bp: bwa aln ref.fa read1.fq > read1.sai; bwa aln ref.fa read2.fq > read2.sai - bwa samse ref.fa reads.sai reads.fq > aln-pe.sam + bwa sampe ref.fa reads1.sai reads2.sai reads1.fq reads2.fq > aln-pe.sam * PacBio subreads to a reference genome: