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fixed a typo in help

This commit is contained in:
Heng Li 2011-01-21 23:56:18 -05:00
parent 0380cf02bf
commit dac5395126
1 changed files with 2 additions and 2 deletions
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4
bwtsw2_main.c
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@ -47,7 +47,7 @@ int bwa_bwtsw2(int argc, char *argv[])
fprintf(stderr, " -r INT gap extension penalty [%d]\n", opt->r); fprintf(stderr, " -r INT gap extension penalty [%d]\n", opt->r);
// fprintf(stderr, " -y FLOAT error recurrence coef. (4..16) [%.1f]\n", opt->yita); // fprintf(stderr, " -y FLOAT error recurrence coef. (4..16) [%.1f]\n", opt->yita);
fprintf(stderr, "\n"); fprintf(stderr, "\n");
fprintf(stderr, " -t INT nmber of threads [%d]\n", opt->n_threads); fprintf(stderr, " -t INT number of threads [%d]\n", opt->n_threads);
fprintf(stderr, " -s INT size of a chunk of reads [%d]\n", opt->chunk_size); fprintf(stderr, " -s INT size of a chunk of reads [%d]\n", opt->chunk_size);
fprintf(stderr, "\n"); fprintf(stderr, "\n");
fprintf(stderr, " -w INT band width [%d]\n", opt->bw); fprintf(stderr, " -w INT band width [%d]\n", opt->bw);
@ -62,7 +62,7 @@ int bwa_bwtsw2(int argc, char *argv[])
fprintf(stderr, " -f FILE file to output results to instead of stdout\n"); fprintf(stderr, " -f FILE file to output results to instead of stdout\n");
fprintf(stderr, "\n"); fprintf(stderr, "\n");
{ if (0) {
double c, theta, eps, delta; double c, theta, eps, delta;
c = opt->a / log(opt->yita); c = opt->a / log(opt->yita);
theta = exp(-opt->b / c) / opt->yita; theta = exp(-opt->b / c) / opt->yita;