From d8d8b230d182974e59cead37127716f378f0da69 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Thu, 16 Oct 2014 15:15:23 -0400 Subject: [PATCH] r906: don't reduce non-ALT mapQ by default --- bwamem.c | 2 +- main.c | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/bwamem.c b/bwamem.c index 79785f4..08588d5 100644 --- a/bwamem.c +++ b/bwamem.c @@ -79,7 +79,7 @@ mem_opt_t *mem_opt_init() o->min_chain_weight = 0; o->max_chain_extend = 1<<30; o->mapQ_coef_len = 50; o->mapQ_coef_fac = log(o->mapQ_coef_len); - o->min_pa_ratio = 0.8; + o->min_pa_ratio = 0; bwa_fill_scmat(o->a, o->b, o->mat); return o; } diff --git a/main.c b/main.c index 6350849..9eb3dbc 100644 --- a/main.c +++ b/main.c @@ -4,7 +4,7 @@ #include "utils.h" #ifndef PACKAGE_VERSION -#define PACKAGE_VERSION "0.7.10-r905-dirty" +#define PACKAGE_VERSION "0.7.10-r906-dirty" #endif int bwa_fa2pac(int argc, char *argv[]);