From d61a1226a8ac3ad1955954658893655b402360b7 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Thu, 23 Oct 2014 14:52:48 -0400 Subject: [PATCH] highlight Liu et al. It seems good. --- README-alt.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/README-alt.md b/README-alt.md index 61839a7..35d9f4c 100644 --- a/README-alt.md +++ b/README-alt.md @@ -156,8 +156,8 @@ have ignored these important genes. We recommend to include the genomic regions of classical HLA genes in the BWA index. This way we will be able to get a more complete collection of reads mapped to HLA. We can then isolate these reads with little computational cost -and type HLA genes with another program, such as [Dilthey et al (2014)][hla1] or -one from [this list][hlatools]. +and type HLA genes with another program, such as [Liu et al (2013)][hla2], +[Dilthey et al (2014)][hla1] or one from [this list][hlatools]. If the postprocessing script `bwa-postalt.js` is invoked with `-p prefix`, it will also write the top three alleles to file `prefix.hla`. However, as most HLA @@ -194,3 +194,4 @@ can even get rid of ALT contigs for good. [hla1]: http://biorxiv.org/content/early/2014/07/08/006973 [hlalink]: http://www.hladiseaseassociations.com [hlatools]: https://www.biostars.org/p/93245/ +[hla2]: http://nar.oxfordjournals.org/content/41/14/e142.full.pdf+html