r313: release bwa-0.7.0
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NEWS
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NEWS
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@ -9,10 +9,10 @@ longer low-divergence query sequences, BWA-MEM is about twice as fast as BWA
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and BWA-SW and is more accurate. It also supports split alignments like BWA-SW
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and BWA-SW and is more accurate. It also supports split alignments like BWA-SW
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and may optionally output multiple hits like BWA. BWA-MEM does not guarantee
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and may optionally output multiple hits like BWA. BWA-MEM does not guarantee
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to find hits within a certain edit distance, but BWA is not efficient for such
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to find hits within a certain edit distance, but BWA is not efficient for such
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task given longer reads, either, and the edit-distance criterion is arguably
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task given longer reads anyway, and the edit-distance criterion is arguably
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not as important in long-read alignment.
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not as important in long-read alignment.
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In addition to the algorithmic improvements, BWA-SW also implements a few
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In addition to the algorithmic improvements, BWA-MEM also implements a few
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handy features in practical aspects:
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handy features in practical aspects:
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1. BWA-MEM automatically switches between local and glocal (global wrt reads;
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1. BWA-MEM automatically switches between local and glocal (global wrt reads;
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@ -47,7 +47,7 @@ for 76bp or longer Illumina reads and long query sequences. The original BWA
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short-read algorithm will not deliver satisfactory results for 150bp+ Illumina
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short-read algorithm will not deliver satisfactory results for 150bp+ Illumina
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reads. Change of mappers will be necessary sooner or later.
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reads. Change of mappers will be necessary sooner or later.
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(0.7.0 beta: 28 Feburary 2013, r304)
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(0.7.0 beta: 28 Feburary 2013, r313)
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