zzh
/
bwa
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

r305: in NEWS, convert TAB to space

This commit is contained in:
Heng Li 2013-02-27 16:56:54 -05:00
parent aef179a580
commit b7791105bc
1 changed files with 7 additions and 7 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

14
NEWS
View File

@ -16,20 +16,20 @@ In addition to the algorithmic improvements, BWA-SW also implements a few
handy features, some of which are experimental: handy features, some of which are experimental:
1. BWA-MEM automatically infers pair orientation from a batch of single-end 1. BWA-MEM automatically infers pair orientation from a batch of single-end
alignments. It allows more than one orientations if there are sufficient alignments. It allows more than one orientations if there are sufficient
reads supporting them. This feature has not been tested on reads from reads supporting them. This feature has not been tested on reads from
Illumina jumping library yet. Illumina jumping library yet.
2. BWA-MEM optionally takes one interleaved fastq for paired-end mapping. It 2. BWA-MEM optionally takes one interleaved fastq for paired-end mapping. It
is possible to convert a name-sorted BAM to an interleaved fastq on the fly is possible to convert a name-sorted BAM to an interleaved fastq on the fly
and feed the data stream to BWA-MEM for mapping. and feed the data stream to BWA-MEM for mapping.
3. BWA-MEM optionally copies FASTA/Q comments to the final SAM output. This 3. BWA-MEM optionally copies FASTA/Q comments to the final SAM output. This
helps to transfer individual read annotations to the output. helps to transfer individual read annotations to the output.
4. BWA-MEM supports more advanced piping. Users can now run: 4. BWA-MEM supports more advanced piping. Users can now run:
(bwa mem ref.fa '<bzcat r1.fq.bz2' '<bzcat r2.fq.bz2') to map bzip'd read (bwa mem ref.fa '<bzcat r1.fq.bz2' '<bzcat r2.fq.bz2') to map bzip'd read
files without replying on the bash feature. files without replying on the bash feature.
The BWA-MEM algorithm is in the beta phase. It is not advised to use BWA-MEM The BWA-MEM algorithm is in the beta phase. It is not advised to use BWA-MEM
for production use yet. However, when the implementation becomes stable after a for production use yet. However, when the implementation becomes stable after a