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r305: in NEWS, convert TAB to space

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Heng Li 2013-02-27 16:56:54 -05:00
parent aef179a580
commit b7791105bc
1 changed files with 7 additions and 7 deletions
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14
NEWS
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@ -16,20 +16,20 @@ In addition to the algorithmic improvements, BWA-SW also implements a few
handy features, some of which are experimental:
1. BWA-MEM automatically infers pair orientation from a batch of single-end
alignments. It allows more than one orientations if there are sufficient
reads supporting them. This feature has not been tested on reads from
Illumina jumping library yet.
alignments. It allows more than one orientations if there are sufficient
reads supporting them. This feature has not been tested on reads from
Illumina jumping library yet.
2. BWA-MEM optionally takes one interleaved fastq for paired-end mapping. It
is possible to convert a name-sorted BAM to an interleaved fastq on the fly
and feed the data stream to BWA-MEM for mapping.
is possible to convert a name-sorted BAM to an interleaved fastq on the fly
and feed the data stream to BWA-MEM for mapping.
3. BWA-MEM optionally copies FASTA/Q comments to the final SAM output. This
helps to transfer individual read annotations to the output.
4. BWA-MEM supports more advanced piping. Users can now run:
(bwa mem ref.fa '<bzcat r1.fq.bz2' '<bzcat r2.fq.bz2') to map bzip'd read
files without replying on the bash feature.
(bwa mem ref.fa '<bzcat r1.fq.bz2' '<bzcat r2.fq.bz2') to map bzip'd read
files without replying on the bash feature.
The BWA-MEM algorithm is in the beta phase. It is not advised to use BWA-MEM
for production use yet. However, when the implementation becomes stable after a