From b22bed2b5e6757961beb9cf1fd51581b6a90571c Mon Sep 17 00:00:00 2001 From: Heng Li Date: Thu, 18 Sep 2014 11:54:23 -0400 Subject: [PATCH] removed <> from markdown --- NEWS.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/NEWS.md b/NEWS.md index cf2f468..3d8dec9 100644 --- a/NEWS.md +++ b/NEWS.md @@ -2,7 +2,7 @@ Release 0.7.11 (XX September, 2014) ----------------------------------- A major change to BWA-MEM is the support of mapping to ALT contigs. To use this -feature, users need to manually create a file ".alt" with each line +feature, users need to manually create a file `indexbase.alt` with each line giving the name of an ALT contig. During alignment, BWA-MEM will be able to classify potential hits to ALT and non-ALT hits. It reports alignments and assigns mapping quality (mapQ) loosely following these rules: