diff --git a/NEWS.md b/NEWS.md index cf2f468..3d8dec9 100644 --- a/NEWS.md +++ b/NEWS.md @@ -2,7 +2,7 @@ Release 0.7.11 (XX September, 2014) ----------------------------------- A major change to BWA-MEM is the support of mapping to ALT contigs. To use this -feature, users need to manually create a file ".alt" with each line +feature, users need to manually create a file `indexbase.alt` with each line giving the name of an ALT contig. During alignment, BWA-MEM will be able to classify potential hits to ALT and non-ALT hits. It reports alignments and assigns mapping quality (mapQ) loosely following these rules: