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command-line prompt

This commit is contained in:
Heng Li 2013-02-08 22:11:44 -05:00
parent 829664d6b5
commit 95a79afe71
1 changed files with 4 additions and 1 deletions
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5
fastmap.c
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@ -33,7 +33,10 @@ int main_mem(int argc, char *argv[])
}
if (optind + 1 >= argc) {
fprintf(stderr, "\n");
fprintf(stderr, "Usage: bwa mem [options] <idxbase> <in1.fq> [in2.fq]\n");
fprintf(stderr, "Usage: bwa mem [options] <idxbase> <in.fq>\n");
fprintf(stderr, "Options: -k INT minimum seed length [%d]\n", opt->min_seed_len);
fprintf(stderr, " -c INT skip seeds with more than INT occurrences [%d]\n", opt->max_occ);
fprintf(stderr, " -s INT look for internal seeds inside a seed with less than INT occ [%d]\n", opt->split_width);
fprintf(stderr, "\n");
free(opt);
return 1;