From 79f174cc572fd520de9416985a42cde459f03b11 Mon Sep 17 00:00:00 2001
From: zzh <zzhofhust@gmail.com>
Date: Thu, 24 Aug 2023 14:27:12 +0800
Subject: [PATCH] =?UTF-8?q?=E5=A2=9E=E5=8A=A0run.sh?=
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---
 run.sh | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)
 create mode 100755 run.sh

diff --git a/run.sh b/run.sh
new file mode 100755
index 0000000..b09e5eb
--- /dev/null
+++ b/run.sh
@@ -0,0 +1,23 @@
+ time ./bwa mem -t 12 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \
+    /home/zzh/data/reference/human_g1k_v37_decoy.fasta \
+    /home/zzh/data/fastq/nm1.fq \
+    /home/zzh/data/fastq/nm2.fq \
+    -o /dev/null
+
+# time ./bwa mem -t 64 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \
+#    /public/home/zzh/data/reference/human_g1k_v37_decoy.fasta \
+#    /public/home/zzh/data/fastq/ZY2003109152013000/nm1.fq \
+#    /public/home/zzh/data/fastq/ZY2003109152013000/nm2.fq \
+#    -o /dev/null
+
+    #/public/home/zzh/data/fastq/n1.fq \
+    #/public/home/zzh/data/fastq/n2.fq \
+
+
+    #/share_nas3/zyseq-release-v1.1.3/zyseq/wes/resource/reference/human_g1k_v37_decoy.fasta \
+    #/share_nas3/zyseq-release-v1.1.3/zyseq/data/n1.fq \
+    #/share_nas3/zyseq-release-v1.1.3/zyseq/data/n2.fq \
+
+    #-o reads_mapping.sam
+
+