diff --git a/run.sh b/run.sh new file mode 100755 index 0000000..b09e5eb --- /dev/null +++ b/run.sh @@ -0,0 +1,23 @@ + time ./bwa mem -t 12 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \ + /home/zzh/data/reference/human_g1k_v37_decoy.fasta \ + /home/zzh/data/fastq/nm1.fq \ + /home/zzh/data/fastq/nm2.fq \ + -o /dev/null + +# time ./bwa mem -t 64 -M -R @RG\\tID:normal\\tSM:normal\\tPL:illumina\\tLB:normal\\tPG:bwa \ +# /public/home/zzh/data/reference/human_g1k_v37_decoy.fasta \ +# /public/home/zzh/data/fastq/ZY2003109152013000/nm1.fq \ +# /public/home/zzh/data/fastq/ZY2003109152013000/nm2.fq \ +# -o /dev/null + + #/public/home/zzh/data/fastq/n1.fq \ + #/public/home/zzh/data/fastq/n2.fq \ + + + #/share_nas3/zyseq-release-v1.1.3/zyseq/wes/resource/reference/human_g1k_v37_decoy.fasta \ + #/share_nas3/zyseq-release-v1.1.3/zyseq/data/n1.fq \ + #/share_nas3/zyseq-release-v1.1.3/zyseq/data/n2.fq \ + + #-o reads_mapping.sam + +