From 40f121473621f8ef8afbc253ab22f2395a4e0827 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Mon, 4 Mar 2013 11:52:11 -0500 Subject: [PATCH] change to debugging code only --- bwamem.c | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bwamem.c b/bwamem.c index 10cfae8..848ade7 100644 --- a/bwamem.c +++ b/bwamem.c @@ -513,7 +513,7 @@ void mem_chain2aln(const mem_opt_t *opt, int64_t l_pac, const uint8_t *pac, int if (gscore <= 0 || gscore <= a->score - opt->pen_clip) a->qe = qe + qle, a->re = rmax[0] + re + tle; else a->qe = l_query, a->re = rmax[0] + re + gtle; } else a->qe = l_query, a->re = s->rbeg + s->len; - if (bwa_verbose >= 4) printf("[%d] score=%d\t[%d,%d) <=> [%ld,%ld)\n", k, a->score, a->qb, a->qe, (long)a->rb, (long)a->re); + if (bwa_verbose >= 4) { printf("[%d] score=%d\t[%d,%d) <=> [%ld,%ld)\n", k, a->score, a->qb, a->qe, (long)a->rb, (long)a->re); fflush(stdout); } // compute seedcov for (i = 0, a->seedcov = 0; i < c->n; ++i) {