From 2485a3ca0276b95a62899b0b4d22e6fa35f3f111 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Sun, 12 Oct 2014 18:24:40 -0400 Subject: [PATCH] bug in the last commit --- bwa-postalt.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bwa-postalt.js b/bwa-postalt.js index 0b6c086..2d64193 100644 --- a/bwa-postalt.js +++ b/bwa-postalt.js @@ -437,7 +437,7 @@ function bwa_postalt(args) if (idx_pri[hits2[0][0]] != null) { var ovlp = idx_pri[hits2[0][0]](start, end); for (var i = 0; i < ovlp.length; ++i) // TODO: requiring reasonable overlap - if (start <= ovlp[i][0] && ovlp[i][1] <= end && alts[ovlp[i][2]] == null) + if (ovlp[i][0] <= start && end <= ovlp[i][1] && alts[ovlp[i][2]] == null) alts[ovlp[i][2]] = [0, 0]; }