From 110bf9b8edd05f05de6b37467745f284b72e36ef Mon Sep 17 00:00:00 2001 From: Heng Li Date: Tue, 9 Mar 2021 00:52:20 -0500 Subject: [PATCH] deprecate bwasw --- main.c | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/main.c b/main.c index a77ba53..22ccd40 100644 --- a/main.c +++ b/main.c @@ -58,7 +58,7 @@ static int usage() fprintf(stderr, "\n"); fprintf(stderr, "Program: bwa (alignment via Burrows-Wheeler transformation)\n"); fprintf(stderr, "Version: %s\n", PACKAGE_VERSION); - fprintf(stderr, "Contact: Heng Li \n\n"); + fprintf(stderr, "Contact: Heng Li \n\n"); fprintf(stderr, "Usage: bwa [options]\n\n"); fprintf(stderr, "Command: index index sequences in the FASTA format\n"); fprintf(stderr, " mem BWA-MEM algorithm\n"); @@ -67,7 +67,7 @@ static int usage() fprintf(stderr, " aln gapped/ungapped alignment\n"); fprintf(stderr, " samse generate alignment (single ended)\n"); fprintf(stderr, " sampe generate alignment (paired ended)\n"); - fprintf(stderr, " bwasw BWA-SW for long queries\n"); + fprintf(stderr, " bwasw BWA-SW for long queries (DEPRECATED)\n"); fprintf(stderr, "\n"); fprintf(stderr, " shm manage indices in shared memory\n"); fprintf(stderr, " fa2pac convert FASTA to PAC format\n");